PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G23510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 172aa    MW: 19290.3 Da    PI: 9.5577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G23510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.39e-111865454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  OB07G23510.1 18 SKACREKLRRDKLNERFLELGAVLEPG---KTPKMDKSAILNDAIRVMTEL 65
                  6789**********************9...9**************998777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-14881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-81270No hitNo description
PROSITE profilePS5088812.91465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-141788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-81865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-92071IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MATQHVSPRS ESVSQPSSKA CREKLRRDKL NERFLELGAV LEPGKTPKMD KSAILNDAIR  60
VMTELRSEAQ KLKESNQSLQ EKIKELKAEK NELRDEKQKL KAEKESLEQQ IKFLNARPSL  120
VPHPPVIPAA AFAAGQKLMM PVIGYPGFPM WQFMPPSDVD TTDDPKSCPP VA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1101961e-149AB110196.1 Oryza sativa Japonica Group mRNA for hypothetical protein, complete cds, clone: 23C4AG047.
GenBankAB1102231e-149AB110223.1 Oryza sativa Japonica Group OsMYC1 mRNA for bHLH-HALZ myc like protein, complete cds.
GenBankAK0588891e-149AK058889.1 Oryza sativa Japonica Group cDNA clone:001-007-D03, full insert sequence.
GenBankCT8305661e-149CT830566.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA057B18, full insert sequence.
GenBankEU8372601e-149EU837260.1 Oryza sativa Japonica Group clone KCS222A01 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694671.11e-117PREDICTED: transcription factor ILR3, partial
SwissprotQ9FH371e-69ILR3_ARATH; Transcription factor ILR3
TrEMBLJ3MLR91e-123J3MLR9_ORYBR; Uncharacterized protein
STRINGOB07G23510.11e-123(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-67bHLH family protein